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Data to be generated
Project 1
Data Generation
Brain tissue from H1 and H2 with European & African ancestry
single nuclei multi-Omic (ATAC, RNAseq), ISOseq
proteomics
immunohistochemistry
iPSC neuron, astrocyte, microglia from H1 and H2
bulk RNAseq, ATACseq, ISOseq, Hi-C
proteomics
iPSC assembloids from H1 and H2
single nuclei multi-Omic (ATAC, RNAseq)
proteomics
iPSC assembloid with CRISPR of candidate regulatory elements in H1 vs H2
single nuclei RNAseq
Project 2
 
Brain tissue from FTD mutation
single nuclei multi-Omic (ATAC, RNAseq), ISOseq
proteomics
immunohistochemistry
iPSC assembloid with CRISPR of MAPT mutations on H1 and H2
iPSC assembloid with CRISPR of MAPT mutations on H1 and H2 single nuclei multi-Omic (ATAC, RNAseq), ISOseq
proteomics
iPSC assembloid with CRISPR candidate regulatory elements on H1 and H2
single nuclei RNAseq
proteomics
immunohistochemistry
cellular phenotypes